Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs10261625 chr7:135173544 C/T 2.07E-9 488 30.77 32.4 3.03 KM Plot
PRAD rs10266715 chr7:135155366 C/T 1.34E-8 494 9.45 32.7 30.3 KM Plot
PRAD rs10267977 chr7:135159392 G/A 2.06E-9 491 30.53 32.52 3.03 KM Plot
PRAD rs10269360 chr7:135147425 A/C 9.67E-9 494 30.77 32.52 3.98 KM Plot
PRAD rs10276768 chr7:135064346 A/G 1.8E-9 492 30.8 31.9 3.03 KM Plot
PRAD rs10418303 chr19:53143616 C/T 1.22E-8 494 30.8 31.18 26.13 KM Plot
PRAD rs1042120 chr19:49983673 C/T 7.13E-7 479 30.33 33.1 24.25 KM Plot
PRAD rs10422888 chr19:45453763 A/G 1.09E-5 487 30.3 31.13 45.2 KM Plot
PRAD rs10424979 chr19:53144356 C/T 1.23E-8 493 30.8 31.18 26.13 KM Plot
PRAD rs10444067 chr10:99442836 G/A 2.24E-7 475 31.37 31.35 24.67 KM Plot
PRAD rs10458163 chr6:3863987 T/C 7.97E-8 470 31.93 29.23 23.08 KM Plot
PRAD rs10458299 chr7:135052348 C/T 3.05E-10 484 30.9 31.9 2.33 KM Plot
PRAD rs10469891 chr2:33944025 T/C 3.42E-5 489 30.77 33.22 24.72 KM Plot
PRAD rs10474812 chr5:7320374 A/G 1.08E-8 489 30.9 30.93 10.07 KM Plot
PRAD rs10474813 chr5:7320805 G/A 0 489 30.9 31.12 4.87 KM Plot